Command Line Commands

List of Commands

Example of a Batch Job

This batch job plots all IGPP-flat files and all IWF-flat files that are in one folder (input parameter path). The error flags are interpolated and the unfiltered and the ‘PC 3’-filtered signals are plotted. To make a batch job more stable, additional try .., catch ..., end statements can be implemented.

function IMF_BATCH(path)


% Examlpe of a batch job


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


%parameter in:


%


%path       : Path of the Flat-files




%                


%parameter out:


%


%  none


%


%  This batch job interpolates error flags and plots the unfiltered signals as


%  well as PC 3 - filtered signals.


%  (PC 3: 0.022Hz - 0.1Hz, Cauer, 6th order, zero phase)


%


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%






% initialize


IMF_ini;






% files should not automatically be loaded into the main menory!!


%XXXXXXXXXXXXXXXXXXXXXXXXXXXX


global g_auto_add_last;


g_auto_add_last = 0;


%XXXXXXXXXXXXXXXXXXXXXXXXXXXX








name = dir(path)






[n,m] = size(name);






% big log viewer and scaling 'automatic MATLAB'


IMF_plot_options('display','log big','scaling','MATLAB');






for i = 1:n


   if name(i).isdir == 0


      if length(name(i).name) > 4;


         if (strcmpi(name(i).name((length(name(i).name)-3):length(name(i).name)),'.hed') == 1) ...


          | (strcmpi(name(i).name((length(name(i).name)-3):length(name(i).name)),'.ffh') == 1)


            %read flat


            IDs = IMF_read_flat('','',name(i).name,path); 


            %IDs is longer than 1 if the flat file is bigger than g_max_bytes


            [dummy,nn] = size(IDs);


            %get highest file ID


            maxID = IDs{nn};


            %increment highest file ID


            ID_num = maxID+1;


            for ii = 1:nn


               % load file


               IMF_load_wsp(IDs{ii});


               % select whole file ID


               IMF_select('ID',IDs{ii});


               % count number of data series


               count = IMF_count_data;


               for iii = 1:3:count


                  if count - iii < 1


                     % last subplot


                     IMF_plot('plot1',[num2str(IDs{ii}) '.' num2str(iii)], ...


                        'Calc','interr');


                     print;


                     IMF_plot('plot1',[num2str(IDs{ii}) '.' num2str(iii)], ... 


                        'Calc','interr','PC 3');


                     print;


                  elseif count - iii < 2


                     % last 2 subplots


                     IMF_plot('plot1',[num2str(IDs{ii}) '.' num2str(iii)], ...


                        'Calc','interr', ...


                        'plot2',[num2str(IDs{ii}) '.' num2str(iii+1)], ...


                        'Calc','interr');


                     print;


                     IMF_plot('plot1',[num2str(IDs{ii}) '.' num2str(iii)], ...


                        'Calc','interr','PC 3', ...


                        'plot2',[num2str(IDs{ii}) '.' num2str(iii+1)], ...


                        'Calc','interr', ...


                        'Calc','PC 3');


                     print;


                  else %three subplots


                     IMF_plot('plot1',[num2str(IDs{ii}) '.' num2str(iii)], ...


                        'Calc','interr', ...


                        'plot2',[num2str(IDs{ii}) '.' num2str(iii+1)], ...


                        'Calc','interr', ...


                        'plot3',[num2str(IDs{ii}) '.' num2str(iii+2)], ...


                        'Calc','interr');


                     print;


                     IMF_plot('plot1',[num2str(IDs{ii}) '.' num2str(iii)], ...


                        'Calc','interr','PC 3', ...


                        'plot2',[num2str(IDs{ii}) '.' num2str(iii+1)], ...


                        'Calc','interr', ...


                        'Calc','PC 3', ...


                        'plot3',[num2str(IDs{ii}) '.' num2str(iii+2)], ...


                        'Calc','interr', ...


                        'Calc','PC 3');


                     print;


                  end;


               end;


            end;


            %delete the created ws*.MAT-files


            IMF_delete_mat(IDs);


            %reset selections and history


            IMF_reset_all;


         end;


      end;


   end;


end;


%renumber the ws*.MAT-files


IMF_reorganize;


 


 

function IMF_BATCH_REC(path)


% Examlpe of a recursive batch job


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


%parameter in:


%


%path       : main path of the Flat-files


%                


%parameter out:


%


%  none


%


%  This batch job calls other batch jobs to work recursive on sub directories


%


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


 


 


IMF_ini;


 


global g_os;


 


%cut off slash or backslash


if strcmp(path(end),g_os) == 1


   path=path(1:end-1);


end;


 


%first call


path_cell = find_sub_path(path,{});


in_path_cell{1}=path;


%concatenate main path


path_cell = cat(2,in_path_cell,path_cell);


 


[m,n]=size(path_cell);


 


%call the batch job in a loop


for i = 1:n


   path = path_cell{i}


   IMF_BATCH(path)


end;


 


 


function path_cell = find_sub_path(dir_path,path_cell);


% recursive search for sub directories


 


global g_os


 


%g_os='\'; %'DOS'


%g_os='/'; UNIX, LINUX


 


D = dir(dir_path);


 


K = [D.isdir];


pos = find(K == 1);


 


for i = pos


   if (strcmpi(D(i).name,'.') == 0) & (strcmpi(D(i).name,'..') == 0)


      name_cell{1} = [dir_path g_os D(i).name];


      path_cell = cat(2,path_cell,name_cell);


      path_cell = find_sub_path([dir_path g_os D(i).name],path_cell);


   end;


end;

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